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Brandley, M.C., Y. Wang, X. Guo, A. Nieto Montes de Oca, M. Feria
Ortiz, T. Hikida, and H. Ota. 2012. The phylogenetic systematics of
blue-tailed skinks (Plestiodon) and the family Scincidae.
Zoological Journal of the Linnean Society 165:163–189. DNA data files Brandley, M.C., Y. Wang, X. Guo, A. Nieto Montes de Oca, M. Feria Ortiz, T. Hikida, and H. Ota. 2011. Accommodating locus-specific heterogeneity in molecular dating methods: an example using inter-continental dispersal of Plestiodon (Eumeces) lizards. Systematic Biology 60:3-15. DNA data files Kuriyama, T., M.C. Brandley, A. Katayama, A. Mori, M. Honda, and M. Hasegawa. 2011. A time-calibrated phylogenetic approach to assessing the phylogeography and colonization history of snakes in the Japanese Izu Islands. Journal of Biogeography, in press. Ratsnake mtDNA Complete Elaphe quadrivirgata mtDNA Brandley, M.C., R.A. Pyron, T.J. Guiher, C.T. Winne, and F.T. Burbrink. 2010. Does dispersal across an aquatic geographic barrier obscure phylogeographic structure in the diamond-backed watersnake (Nerodia rhombifer)? Molecular Phylogenetics and Evolution 57:552-560. Natricine Cytb Nerodia ND1 He, K., Y-J Li, M.C. Brandley, L-K Lin, Y-X Wang, Y-P Zhang, X-L Jiang. 2010. A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution. Molecular Phylogenetics and Evolution 56:734-746. DNA data file Suzuki, D., M.C. Brandley, and M. Tokita. The molecular phylogeny of an ancient lineage of ray-finned fishes (Polypteridae) with implications for the evolution of body elongation, pelvic fin loss, and craniofacial morphology in Osteichthyes. BMC Evolutionary Biology 10:21. mtDNA Xiong, Y., M.C. Brandley, S. Xu, K. Zhou, and G. Yang. 2009. Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales. BMC Evolutionary Biology 9:20. mtDNA Brandley, M.C., J.P. Huelsenbeck, and J.J. Wiens. 2008. Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms. Evolution 62:2042-2064. Measurement data Fingers file Toes file Squamate phylogeny Brandley, M.C., A. Schmitz, and T.W. Reeder. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology 54:373-390. mtDNA Schmitz, A., M.C. Brandley, P. Mausfeld, M. Vences, F. Glaw, R.A. Nussbaum, and T.W. Reeder. 2005. Opening the black box: phylogenetics and morphological evolution of the Malagasy fossorial lizards of the subfamily "Scincinae". Molecular Phylogenetics and Evolution 34:118-133. mtDNA
Brandley, M.C., and K. de Queiroz. 2004. Phylogeny, ecomorphological evolution, and historical biogeography of the Anolis cristatellus series. Herpetological Monographs 18:90-126. |
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